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YAYINLAR

2024

  1. Elif Fatma Topkara, Beyza Kaba, Hayrettin Saygın, Eda Turgut Uğurtay, Hojjat Pashazade. Determination of the Phytochemical, Antioxidant, and Antimicrobial Properties of Smilax excelsa L. Extracted with Different Solvents
  2. Ali Osman Adıgüzel, Fatma Şen, Serpil Könen Adıgüzel, Ahmet Erkan Kıdeyş, Arzu Karahan, Tuğrul Doruk, Münir Tunçer. Identification of Cutinolytic Esterase from Microplastic-Associated Microbiota Using Functional Metagenomics and Its Plastic Degrading Potential
  3. Sümeyye Cilmeli, Tuğrul Doruk, Serpil Könen Adıgüzel, Ali Osman Adıgüzel. A thermostable and acidophilic mannanase from Bacillus mojavensis: its sustainable production using spent coffee grounds, characterization, and application in grape juice processing
  4. Özgecan Madenli, Ceyhun Akarsu, Ali Osman Adıgüzel, Ali Altuntepe, Recep Zan, Ece Ümmü Deveci. Synthesis of graphite/rGO-modified fungal hyphae for chromium (VI) bioremediation process
  5. Ali Osman Adıgüzel, Erdal Yabalak, Sümeyye Cilmeli, Recep Tayyip Durgun, Nisa Gül Kaya. Robust peroxidase from Bacillus mojavensis TH309: Immobilization on walnut shell hydrochar and evaluation of its potential in dye decolorization
  6. Hayrettin Saygın, Kıymet Güven, Demet Çetin, Nevzat Şahin Polyphasic characterization and genomic insights into Nocardioides turkmenicus sp. nov. isolated from a desert soil
  7. Bayram Ali Yerlikaya, Karam Mostafa Shahat Alı Karam Mostafa Shahat Alı, Abdullah Aydın, Seher Yerlikaya, Momna Mehmood, Nisa Yılmaz, Kubilay Yıldırım, Musa Kavas. Innovations in Plant Genome Editing and Biotechnology: Addressing Global Agricultural Challenges
  8. Ali Osman Adıgüzel, Fatma Şen, Serpil Könen Adıgüzel, Ahmet Erkan Kıdeyş, Arzu Karahan, Tuğrul Doruk, Münir Tunçer. Identification of Cutinolytic Esterase from Microplastic-Associated Microbiota Using Functional Metagenomics and Its Plastic Degrading Potential

2023

  1. Hilal Ateş, Hayrettin Saygın, Merve Cora, Ali Osman Kılıç, Hilal Ay. Genome-based classification of Streptomyces anatolicus sp. nov., an actinobacterium with antimicrobial and cytotoxic activities, and reclassification of Streptomyces nashvillensis as a later heterotypic synonym of Streptomyces tanashiensis
  2. Serpil Könen Adıgüzel. The possible cytotoxicity and genotoxicity assessment of indaziflam on HepG2 cells
  3. Sadık Demirtaş, Medine Özmen, Metin Silsüpür, Damla Kıral. Comparative Skull and Mandible Geometric Morphometrics of Two Species of Mice, Mus domesticus and Mus macedonicus (Muridae, Rodentia) in Turkey
  4. Sadık Demirtaş. Genetic diversity, phylogeography and historical demography of the Golden Jackal, Canis aureus Linnaeus, 1758, in Turkey as inferred from mtDNA sequences
  5. İslam Gündüz, Sadık Demirtaş, Metin Silsüpür, Medine Özmen, P. David Polly, Bılton Davıd T. Notes from the Anatolian underground: two new mole taxa from Eastern Turkey, together with a revised phylogeny of the genus Talpa (Mammalia: Eulipotyphla: Talpidae)
  6. Hanne Nur Kuruçay, Cüneyt Tamer, Bahadır Müftüoğlu, Ahmed Eısa Elhag Ibrahım, Seda Gözel, Yasemin Çiçek, Sadık Demirtaş, Emre Özan, Harun Albayrak, Semra Gümüşova, Zafer Yazıcı. First isolation and molecular characterization of canine parvovirus-type 2b (CPV-2b) from red foxes (Vulpes vulpes) living in the wild habitat of Turkey
  7. Medine Özmen, Sadık Demirtaş, Herman Jeremy S., İslam Gündüz. Mitochondrial genetic variation in long-eared hedgehogs, Hemiechinus auritus, from the Anatolian Peninsula and Cyprus
  8. Ali Tümay Gürler, Sadık Demirtaş, Cenk Soner Bölükbaş, Elif Burcu Gençay Topçu, Öykü Barılı, Efe Karaca, Aytaç Akçay, Mustafa Açıcı, Şinasi Umur, Peter Deplazes. Investigating intermediate hosts of Echinococcus multilocularis throughout Turkey: Focus on voles
  9. Vera A. Matrosova, İslam Gündüz, Oleg A. Ermakov, Sadık Demirtaş, Evgeniy Simonov.The complete mitochondrial genome of endemic Taurus ground squirrel Spermophilus taurensis (Rodentia: Sciuridae)
  10. Birgül Mazmancı, Serpil Könen Adıgüzel, Yiğit Süha Sadak, Derya Yetkin, Hilal Ay, Ali Osman Adıgüzel. Antimicrobial, antibiofilm, and anticancer potential of silver nanoparticles synthesized using pigment-producing Micromonospora sp. SH121
  11. Zeynep Gül Aytaş, Münir Tunçer, Çağrı Seda Kul, Sümeyye Cilmeli, Nurayan Aydın, Tuğrul Doruk, Ali Osman Adıgüzel Partial characterization of β-glucosidase, β-xylosidase, and α-l-arabinofuranosidase from Jiangella alba DSM 45237 and their potential in lignocellulose-based biorefining
  12. Ali Osman Adıgüzel, Serpil Könen Adıgüzel, Sümeyye Cilmeli, Birgül Mazmancı, Erdal Yabalak, Sevde Üstün Odabaşı, Nisa Gül Kaya, Mehmet Ali Mazmancı. Heterologous expression, purification, and characterization of thermo- and alkali-tolerant laccase-like multicopper oxidase from Bacillus mojavensis TH309 and determination of its antibiotic removal potential
  13. Teodoro Cardi, Jana Murovec, Allah Bakhsh, Justyna Boniecka, Tobias Bruegmann, Simon E. Bull, Tom Eeckhaut, Matthias Fladung, Vladislava Galovic, Anna Linkiewicz, Jana Murovec, Tjasa Lukan, Isabel Mafra, Krzysztof Michalski, Musa Kavas, Alessandro Nicolia, Justyna Nowakowska, Laszlo Sági, Cecilia Sarmiento, Kubilay Yıldırım, Milica Zlatković, Goetz Hensel, Katrijn Van Laere. CRISPR/Cas-mediated plant genome editing: outstanding challenges a decade after implementation
  14. Aslıhan Kurt Kızıldoğan, Çiğdem Otur, Kubilay Yıldırım, Musa Kavas, Büşra Abanoz Seçgin. In-depth comparative transcriptome analysis of Purpureocillium sp. CB1 under cadmium stress
  15. Kubilay Yıldırım, Musa Kavas, İlkay Sevgen Küçük, Zafer Seçgin, Çiğdem Saraç. Development of Highly Efficient Resistance to Beet Curly Top Iran Virus (Becurtovirus) in Sugar Beet (B. vulgaris) via CRISPR/Cas9 System
  16. Kubilay Yıldırım, Dragana Miladinovic, Jeremy Sweet, Melekşen Akın, Vladislava Galovic, Musa Kavas, Milica Zlatkoviç, Eugenia De Andrade. Genome editing for healthy crops: traits, tools and impacts
  17. Musa Kavas, Karam Mostafa, Zafer Seçgin, Bayram Ali Yerlikaya, Kubilay Yıldırım, Ökhan Gökdemir. Genome-wide analysis of DUF221 domain-containing gene family in common bean and identification of its role on abiotic and phytohormone stress response
  18. Figen Öngöz Dede, Ceren Gökmenoğlu, Emrah Türkmen, Şeyma Bozkurt Doğan, Burhanettin Sertaç Ayhan, Kubilay Yıldırım. Six miRNA expressions in the saliva of smokers and non‐smokers with periodontal disease
  19. Aytaç Zeynep Gül, Münir Tunçer, Kul C. Seda, Cilmeli Sümeyye, Aydın Nurayan, Tuğrul Doruk, Ali Osman Adıgüzel. Partial characterization of β-glucosidase, β-xylosidase, and α-l-arabinofuranosidase from Jiangella alba DSM 45237 and their potential in lignocellulose-based biorefining

2022

  1. Elif Gülşen Karabacak, Ali Osman Adıgüzel, Hayrettin Saygın, Ahmet Hilmi Çon, Akademik Gida , 2022. Aktinobakteri İzolatlarının Transglutaminaz, Levansukraz ve Beta Galaktozidaz Üretim Yetenekleri.
  2. Aysel Veyisoğlu, Demet Tatar, Hayrettin Saygın, Demet Çetin, Kıymet Güven, Nevzat Şahin. Saccharopolyspora soli sp. nov., isolated from Northern Cyprus soil.
  3. Lorena Carro, Aysel Veyisoğlu, Kıymet Güven, Peter Schumann,Hans-Peter Klenk, Nevzat Şahin. Genomic Analysis of a Novel Heavy Metal Resistant Isolate from a Black Sea Contaminated Sediment with the Potential to Degrade Alkanes: Plantactinospora alkalitolerans sp. nov.
  4. Zafer Seçgin, Selman Uluışık, Kubilay Yıldırım, Mohamed Farah Abdulla, Karam Mostafa, Musa Kavas. Genome-Wide Identification of the Aconitase Gene Family in Tomato (Solanum lycopersicum) and CRISPR-Based Functional Characterization of SlACO2 on Male-Sterility.
  5. Emre Aksoy, Kubilay Yıldırım, Musa Kavas, Ceyhun Kayıhan, İlkay Sevgen Küçük. General guidelines for CRISPR/Cas-based genome editing in plants.
  6. Aslıhan Kurt-Kızıldoğan, Neslihan Akarsu, Çiğdem Otur, Arif Kivrak, Nevroz Aslan-Ertas, Sevki Arslan, Dogukan Mutlu, Metin Konus, Can Yılmaz, Dogan Cetin, Tufan Topal and Nevzat Şahin. A Novel 4H-Chromen-4-One Derivative from Marine Streptomyces ovatisporus S4702T as Potential Antibacterial and Anti-Cancer Agent
  7. Kubilay Yıldırım, Musa Kavas, Rıza Kaya, Zafer Seçgin, Cansu Can, Ilkay Sevgen, Çiğdem Gökçek Saraç and Vahid Tahan. Genome-based identification of beet curly top Iran virus infecting sugar beet in Turkey and investigation of its pathogenicity by agroinfection
  8. Adıgüzel , A. O. Valorization of banana pseudostem endoxylanase production by Streptomyces sp SH5027 using statistical approaches and its characterization and application in bread making
  9. CİLMELİ, S., DORUK, T., KÖNEN ADIGÜZEL, S., & ADIGÜZEL, A. O. A thermostable and acidophilic mannanase from Bacillus mojavensis its sustainable production using spent coffee grounds characterization and application in grape juice processing
  10. AYDIN, F., SATICIOĞLU, İ. B., AY, H., KAYMAN, T., KARAKAYA, E., & ABAY, S. Description of the two novel species of the genus Helicobacter Helicobacter anatolicus sp nov and Helicobacter kayseriensis sp nov isolated from feces of urban wild birds

2021

  1. Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Muhammed Duman and Nevzat Sahin. Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey
  2. Hayrettin Saygin, Hilal Ay, Kiymet Guven, Demet Cetin and Nevzat Sahin. Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil
  3. Ali Tokatli, Onder Idil, Hayrettin Saygin and Nevzat Sahin. Streptomyces ureilyticus sp. nov. and Streptomyces mesophilus sp. nov., two novel Actinobacteria with antimicrobial activity isolated from lake sediment
  4. Muhammed Duman, Hilal Ay, Soner Altun, Nevzat Sahin and Izzet Burcin Saticioglu. Flavobacterium muglaense sp. nov. isolated from internal organs of apparently healthy rainbow trout
  5. Demet Tatar, Aysel Veyisoglu, Hayrettin Saygin and Nevzat Sahin. Streptomyces boncukensis sp. nov., isolated from saltern soil
  6. Talha Gencbay, Hayrettin Saygin, Kiymet Guven, Ahmet Ridvan Topkara, Salih Saricaoglu, Nevzat Sahin and Kamil Isik. Streptomyces scabichelini sp. nov., isolated from soil
  7. Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Nevzat Sahin and Muhammed Duman. Flavobacterium bernardetii sp. nov., a possible emerging pathogen of farmed rainbow trout (Oncorhynchus mykiss) in cold water
  8. Hayrettin Saygin, Hilal Ay, Kiymet Guven, Kadriye Inan-Bektas, Demet Cetin and Nevzat Sahin. Saccharopolyspora karakumensis sp. nov., Saccharopolyspora elongata sp. nov., Saccharopolyspora aridisoli sp. nov., Saccharopolyspora terrae sp. nov. and their biotechnological potential revealed by genome analysis
  9. Salih Saricaoglu, Hayrettin Saygin, Ahmet Ridvan Topkara, Talha Gencbay, Kiymet Guven, Demet Cetin, Nevzat Sahin and Kamil Isik. Actinomadura soli sp. nov., isolated from the top soil layer on basaltic material in Turkey
  10. Omer F. Celik, Ahmet H. Con, Hayrettin Saygin, Nevzat Şahin and HasanTemiz. Isolation and identification of lactobacilli from traditional yogurts as potential starter cultures
  11. Hayrettin Saygin. Genomic insight into the Streptomyces aurantiacus clade: reclassification of Streptomyces ederensis as a later heterotypic synonym of Streptomyces umbrinus and Streptomyces glomeroaurantiacus as a later heterotypic synonym of Streptomyces aurantiacus
  12. Numan Saleh Zada, Ali Osman Belduz, Halil Ibrahim Güler, Anum Khan, Miray Sahinkaya, Arife Kaçıran, Hilal Ay, Malik Badshah, Aamer Ali Shah and Samiullah Khan. Cloning, expression, biochemical characterization, and molecular docking studies of a novel glucose tolerant β-glucosidase from Saccharomonospora sp. NB11
  13. Hilal Ay. Genomic insight into a novel actinobacterium, Actinomadura rubrisoli sp. nov., reveals high potential for bioactive metabolites
  14. Zeynep Demir Öksüz, Tuğrul Doruk, Nevin Yağcı and Sedef Tunca Gedik. Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
  15. Mouktar Abdi Barkad, Aslı Bayraktar, Tuğrul Doruk and Sedef Tunca. Effect of lon Protease Overexpression on Endotoxin Production and Stress Resistance in Bacillus thuringiensis
  16. Semiha Akçaözoğlu, Ali Osman Adıgüzel, Kubilay Akçaözoğlu, Ece Ümmü Deveci and Çağdaş Gönen. Investigation of the bacterial modified waste PET aggregate VIA Bacillus safensis to enhance the strength properties of mortars
  17. Serpil Könen Adıgüzel, Ali Osman Adıgüzel ve Tuğba Çelik. Gümüş Nanoparçacıklarının Kribbella turkmenica 16K104 Aracılığıyla Sentezi, Karakterizasyonu, Antimikrobiyal Aktivitesinin Belirlenmesi ve Genotoksik Potansiyelinin Değerlendirilmesi
  18. Dragana Miladinovic, Dulce Antunes, Kubilay Yıldırım, Allah Bakhsh, Sandra Cvejić, Ankica Kondić-Špika, Ana Marjanovic Jeromela, Hilde-Gunn Opsahl-Sorteberg, Antonios Zambounis and Zoe Hilioti. Targeted plant improvement through genome editing: from laboratory to field
  19. Zafer Seçgin, Musa Kavas and Kubilay Yıldırım. Optimization of Agrobacterium-mediated transformation and regeneration for CRISPR/ Cas9 genome editing of commercial tomato cultivars
  20. Musa Kavas, Kubilay Yıldırım, Zafer Seçgin, Mohamed Farah Abdulla and Gökhan Gökdemir. Genome-wide identification of the BURP domain-containing genes in Phaseolus vulgaris
  21. Musa Kavas,Kubilay Yıldırım, Zafer Seçgin and Gökhan Gökdemir. Discovery of simple sequence repeat (SSR) markers in hazelnut (Corylus avellana L.) by transcriptome sequencing and SSR-based characterization of hazelnut cultivars

2020

  1. Kadir Erol, Melda Bolat, Demet Tatar, Cengiz Nigiz and Dursun Ali Köse. Synthesis, characterization and antibacterial application of silver nanoparticle embedded composite cryogels
  2. Hayrettin Saygin, Aysel Veyisoglu, Demet Tatar, Cengiz Nigiz, Ali Tokatli and Nevzat Sahin. Streptomyces coryli sp. nov., isolated from hazelnut orchard soil
  3. Tuğba Aycan, Filiz Öztürk, Tuğrul Doruk, Serkan Demir, Melek Fidan and Hümeyra Paşaoğlu. Synthesis, structural, spectral and antimicrobial activity studies of copper-nalidixic acid complex with 1,10-phenanthroline: DFT and molecular docking
  4. Erdal Yabalak, Zuhal Emire, Ali Osman Adıgüzel, Serpil Könen Adıgüzel and A. Murat Gizir. Wide-scale evaluation of Origanum munzurense Kit Tan & Sorger using different extraction techniques: Antioxidant capacity, chemical compounds, trace element content, total phenolic content, antibacterial activity and genotoxic effect
  5. Ali Osman Adıgüzel. Production and characterization of thermo-, halo- and solvent-stable esterase from Bacillus mojavensis TH309
  6. Alper Dede, Kıymet Güven, Nevzat Şahi̇n. Isolation, plant growth-promoting traits, antagonistic effects on clinical and plant pathogenic organisms and identification of actinomycetes from olive rhizosphere
  7. Aysel Veyisoglu, Lorena Carro, Demet Cetin, Jose M. Igual, Hans-Peter Klenk and Nevzat Sahin. Micromonospora orduensis sp. nov., isolated from deep marine sediment
  8. Lorena Carro, Aysel Veyisoglu, Demet Cetin, José M. Igual, Hans-Peter Klenk, Martha E. Trujillo and Nevzat Sahin. A study of three bacteria isolated from marine sediment and description of Micromonospora globispora sp. nov.
  9. Hayrettin Saygin, Imen Nouioui, Hilal Ay, Kiymet Guven, Demet Cetin, Hans-Peter Klenk, Michael Goodfellow and Nevzat Sahin. Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.
  10. Ahmet Adiguzel, Hilal Ay, Mustafa Ozkan Baltaci, Sumeyya Akbulut, Seyda Albayrak and Mehmet Akif Omeroglu. Genome-based classification of Calidifontibacillus erzurumensis gen. nov., sp. nov., isolated from a hot spring in Turkey, with reclassification of Bacillus azotoformans as Calidifontibacillus azotoformans comb. nov. and Bacillus oryziterrae as Calidifontibacillus oryziterrae comb. nov.
  11. Hilal Ay, Hayrettin Saygin and Nevzat Sahin. Phylogenomic revision of the family Streptosporangiaceae, reclassification of Desertactinospora gelatinilytica as Spongiactinospora gelatinilytica comb. nov. and a taxonomic home for the genus Sinosporangium in the family Streptosporangiaceae
  12. Hayrettin Saygin, Hilal Ay and Nevzat Sahin. Shimazuella alba sp. nov. isolated from desert soil and emended description of the genus Shimazuella Park et al. 2007
  13. Hilal Ay. Nonomuraea terrae sp. nov., isolated from arid soil
  14. Hayrettin Saygin, Hilal Ay, Kiymet Guven, Demet Cetin and Nevzat Sahin. Streptomyces cahuitamycinicus sp. nov., isolated from desert soil and reclassification of Streptomyces galilaeus as a later heterotypic synonym of Streptomyces bobili
  15. Mustafa Ozkan Baltaci, Hilal Ay, Sumeyya Akbulut, Gulsah Adiguzel, Seyda Albayrak, Mehmet Akif Omeroglu, Hakan Ozkan, Mesut Taskin and Ahmet Adiguzel. Bacillus pasinlerensis sp. nov., a thermophilic bacterium isolated from a hot spring in Turkey
  16. Hayrettin Saygin, Hilal Ay, Kiymet Guven, Demet Cetin and Nevzat Sahin. Micromonospora deserti sp. nov., isolated from the Karakum Desert
  17. Hayrettin Saygin, Hilal Ay, Kiymet Guven and Nevzat Sahin. Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov
  18. Hilal Ay, Imen Nouioui, Hans-Peter Klenk, Demet Cetin, José M. Igual, Nevzat Sahin and Kamil Isik. Genome-based classification of Micromonospora craterilacus sp. nov., a novel actinobacterium isolated from Nemrut Lake
  19. Hilal AY. Phylogeny of Plant Growth-Promoting Actinobacteria Isolated from Legume Nodules in Turkey
  20. Ali Tokatli, Onder Idil, Aysel Veyisoglu, Hayrettin Saygin, Kiymet Guven, Demet Cetin and Nevzat Sahin. Streptomyces boluensis sp. nov., isolated from lake sediment
  21. Salih Saricaoglu, Hayrettin Saygin, Ahmet Ridvan Topkara, Talha Gencbay, Kiymet Guven, Demet Cetin, Nevzat Sahin and Kamil Isik. Nonomuraea basaltis sp. nov., a siderophore-producing actinobacteria isolated from surface soil of basaltic parent material